- Bioinformatik Facility
Tätigkeitsschwerpunkte
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Developing analysis pipeline for whole genome sequencing data (raw data QC, mapping, marking duplicate, coverage etc.)
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Developing mutation calling and annotation pipeline
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Analyzing next-generation sequencing data using popular NGS analysis tools like BWA, GATK, Samtools, Picard-tools, Bedtools, Bowtie2 etc.
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Analyzing next-generation sequencing data using the publicly available biological databases and servers like NCBI, PDB, dbSNP, KEGG, RefSeq, EntrezGene, GeneBank, Ensembl, Pfam, GO etc.
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Development of bioinformatics tools for RNA secondary structure analysis etc.
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High performance and parallelization computing (SGE, PBS etc.)
Lebenslauf
Publikationen
First report of Escherichia coli co-producing NDM-1 and OXA-232
Both A, Huang J, Kaase M, Hezel J, Wertheimer D, Fenner I, Günther T, Grundhoff A, Büttner H, Aepfelbacher M, Rohde H, Hentschke M
DIAGN MICR INFEC DIS. 2016;86(4):437-438.
Autoimmune Renal Disease Is Exacerbated by S1P-Receptor-1-Dependent Intestinal Th17 Cell Migration to the Kidney
Krebs C, Paust H, Krohn S, Koyro T, Brix S, Riedel J, Bartsch P, Wiech T, Meyer-Schwesinger C, Huang J, Fischer N, Busch C, Mittrücker H, Steinhoff U, Stockinger B, Perez L, Wenzel U, Janneck M, Steinmetz O, Gagliani N, Stahl R, Huber S, Turner J, Panzer U
IMMUNITY. 2016;45(5):1078-1092.
Analysing RNA-kinetics based on folding space abstraction
Huang J, Voß B
BMC bioinformatics. 2014;15(1):60.
Abstract folding space analysis based on helices
Huang J, Backofen R, Voß B
RNA. 2012;18(12):2135-2147.
RNAHeliCes -- Folding space analysis based on position aware structure abstraction
Huang J, Voß B
2011.
Letzte Aktualisierung aus dem FIS: 17.07.2017 - 00:04 Uhr