% List of open inputs
% Named Directory Selector: Directory - cfg_files
% Named File Selector: File Set - cfg_files
% Named File Selector: File Set - cfg_files
% Named File Selector: File Set - cfg_files
% Coregister: Estimate: Source Image - cfg_files
% fMRI model specification: Multiple conditions - cfg_files
% fMRI model specification: Multiple conditions - cfg_files
% fMRI model specification: Multiple conditions - cfg_files
projdir = '/home/glauche/beispielstudie_vg';
VPs = {
     'VP1'
     'VP2'
    };
sess1 = {
    'S1'
    'S1'
    };
sess2 = {
    'S2'
    'S2'
    };
sess3 = {
    'S3'
    'S3'
    };
nrun = numel(VPs); % enter the number of runs here
jobfile = {'/home/glauche/beispielstudie_vg/batches/2018-batch-scripted-preprocessing_stats_job.m'};
jobs = repmat(jobfile, 1, nrun);
inputs = cell(8, nrun);
for crun = 1:nrun
    subjdir = fullfile(projdir, VPs{crun});
    inputs{1, crun} = {subjdir}; % Named Directory Selector: Directory - cfg_files
    inputs{2, crun} = cfg_getfile('FPList', fullfile(subjdir, sess1{crun}), '^f.*nii$'); % Named File Selector: File Set - cfg_files
    inputs{3, crun} = cfg_getfile('FPList', fullfile(subjdir, sess2{crun}), '^f.*nii$'); % Named File Selector: File Set - cfg_files
    inputs{4, crun} = cfg_getfile('FPList', fullfile(subjdir, sess3{crun}), '^f.*nii$'); % Named File Selector: File Set - cfg_files
    inputs{5, crun} = cfg_getfile('FPList', fullfile(subjdir, 'highres'), '^f.*nii$'); % Coregister: Estimate: Source Image - cfg_files
    inputs{6, crun} = {fullfile(subjdir, 'multicond_S1.mat')}; % fMRI model specification: Multiple conditions - cfg_files
    inputs{7, crun} = {fullfile(subjdir, 'multicond_S2.mat')}; % fMRI model specification: Multiple conditions - cfg_files
    inputs{8, crun} = {fullfile(subjdir, 'multicond_S3.mat')}; % fMRI model specification: Multiple conditions - cfg_files
end
spm('defaults', 'FMRI');
spm_jobman('run', jobs, inputs{:});